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The Gut Health Blueprint

12 weeks, five arms, one pick each

5pathways, one pick each
20options to swap or stack
12week schedule
9markers to draw first

Everything on this page is free. The stack, why each pick beat its alternatives, every option, the bloodwork and the safety lines. The week-by-week schedule and the decision rules are the members half.

Built on 237 compounds and 350 supplements · 1,469 members · 92% stay past month one

Gut symptoms are the least specific in medicine. Bloating can be insufficient stomach acid or too much fermentation; those are opposite problems with opposite answers, and treating one as the other is why people spend years on the wrong supplements. The order matters more here than on any other page. Repair the barrier and get digestion working before adding fibre or probiotics — feeding a dysbiotic gut with prebiotics makes bloating worse, and that experience is what convinces people fibre is their enemy when the real problem was sequence.

Research protocol

This is a theoretical research protocol written for the research community. The compounds below are supplied for research purposes and are not approved medicines — several are not approved for human use in any jurisdiction. Nothing here is medical advice, a prescription, or a recommendation for human use, and it has not been evaluated by the FDA. Full disclaimer & affiliate disclosure →

Who this is forSomeone with bloating, irregularity or reflux that has been going on for months. If you have blood in your stool, unintended weight loss, or symptoms that started suddenly after 50, this is the wrong page — those need investigating, not supplementing.
How these combine

Can you run all of them? Not this time - and here is why

Order matters more than quantity. Feeding an overgrowth with prebiotics makes it worse, so the microbiome arm can be actively wrong until the overgrowth arm has run. Barrier, digestive output and motility stack freely.

This is a general protocol. You make the final call on how much of it to run — or have it built around your labs.

Start here

Which of these 5 is actually you?

This tells you where your biggest leverage is — where to start, not where to stop. Read the But line too: it is what each lane cannot do for you, which is the part a list of options never tells you.

1
Barrier integrity & mucosal repair
Symptoms that go beyond digestion - skin, joints, brain fog, reacting to foods that used to be fine.
But 'Leaky gut' is a real measurable phenomenon and a badly abused marketing term. The measurement exists; most products claiming to fix it have not been tested against it.
2
Microbiome composition & prebiotic substrate
It started after antibiotics, or your diet has been narrow for a long time.
But Probiotic effects are strain-specific and most products do not use the strains with data. Colonisation is inconsistent at best.
3
Digestive output — acid, enzymes & bile
Heaviness an hour after eating, undigested food, or floating stools. It is mechanical, not inflammatory.
But Reflux is more often too little acid than too much - but getting that backwards is genuinely uncomfortable, so this is a lane to trial carefully.
4
Motility, IBS & the brain-gut axis
Pain and bloating that move with stress, and a pattern that alternates rather than stays.
But This is the lane where diet and stress outperform every supplement, and the honest answer is not a purchase.
5
Overgrowth, dysbiosis & antimicrobials
Bloating within 30 minutes of eating, badly worse on fibre and prebiotics - which is the tell.
But Getting this one wrong makes things worse fast. Feeding an overgrowth with prebiotics is the classic mistake, and this lane warrants testing rather than guessing.

Before any of it — the foundation

These four are not a disclaimer at the bottom of the page. They are the reason the rest of it works, and every one of them is free.

Sleep — 7–9 h, consistent timing

Growth hormone is released in pulses during deep sleep, insulin sensitivity is measurably worse after one bad night, and appetite regulation collapses without it. Every compound below works through a system that sleep already governs. This is not filler advice — it is the highest-leverage item on the page and it is free.

Protein — 1.6–2.2 g/kg bodyweight daily

The single dietary variable with the most consistent evidence behind it for body composition, in both directions — building and preserving. Under-eating protein while running anything anabolic is paying for a signal with no substrate to act on.

Resistance training — 3–4 sessions weekly, progressive

Nothing here substitutes for mechanical tension. Compounds change how well you recover from and adapt to training; they do not replace the stimulus. A protocol run without training reliably produces the side effects and not the results.

Steps — 8,000–12,000 daily

Non-exercise activity is the largest and most variable component of daily energy expenditure, and it is the one that quietly falls when you start dieting. Tracking it stops the metabolic adaptation people blame on their thyroid.

The stack

How to read thisFive arms, and the sequence is the intervention. Barrier and digestion first, microbiome second, fibre last. Running them in the wrong order is the single most common reason a gut protocol makes someone feel worse.
On the evidence

Said once. Probiotics, peppermint oil, psyllium and glutamine have real randomised data. The peptide options are earlier. Unproven is not the same as ineffective, and each item's page carries its evidence tier. One thing specific to this goal: probiotic evidence is strain-specific, not species-specific. A trial on one strain says nothing about another with the same genus name, and almost all marketing ignores that.

Each pick names what it was chosen over and why. That is the difference between a blueprint and a list — if you disagree with a choice, the alternative is right there and swapping it does not break the rest.

Section 1.1

Peptides 1

Short amino-acid chains that signal rather than force. Almost all are injected or intranasal, they need reconstituting, and they are the reason most people are on this site.

Barrier integrity & mucosal repair
BPC-157 (inj/oral)
The barrier arm

The peptide answer to a leaky barrier, and the one place oral dosing is genuinely appropriate — the target tissue IS the gut, so it does not need to survive first-pass to reach it. The proposed mechanism is angiogenesis and cytoprotection: new blood supply into damaged mucosa plus protection of the cells already there.

Start here — the barrier comes before everything
Oral, daily, from week 1
The other lanes in this arm

This arm has more genuinely distinct mechanisms than any other on the page, and they are not interchangeable. Larazotide targets tight junctions directly and is the one with coeliac trial data. GLP-2 drives mucosal GROWTH — it is the mechanism behind teduglutide for short bowel syndrome, which is the most serious indication anything here treats. KPV is anti-inflammatory, an alpha-MSH fragment aimed at the inflamed gut rather than the leaky one. L-glutamine is fuel for the cells doing the repairing. Zinc carnosine adheres to the surface. BPC-157 is the base because it covers the widest range of gut presentations and because the oral route actually makes sense here. If your problem is specifically coeliac-related permeability, larazotide is the more targeted answer — and if it is inflammation rather than permeability, KPV is.

Stack this arm deeper6 optional add-ons

Each of these sits in this same pathway, so it starts the week this pathway starts. Swapping one in for the pick above does not change the schedule.

KPV

A tripeptide fragment of alpha-MSH with strong anti-inflammatory signalling and a specific record in gut and skin. This is the arm to reach for when the problem is inflammation rather than permeability — IBD-type presentations rather than bloating.

The trade-off Human data is limited. Narrower than BPC-157 — it does little for a barrier that is leaky without being inflamed.

Larazotide

Targets tight junctions directly — the actual structures that fail in intestinal permeability. It is the one option here with real coeliac trial data, developed specifically for gluten exposure in people already on a gluten-free diet.

The trade-off Very narrow by design. It addresses permeability and nothing else — no anti-inflammatory or growth effect — and its trials were in coeliac disease specifically.

GLP-2

Drives actual mucosal growth — increased villus height and crypt depth, more absorptive surface. Its analogue teduglutide is licensed for short bowel syndrome, which makes this the most clinically serious mechanism in the arm.

The trade-off Growth signalling in the gut is exactly what it sounds like — teduglutide's label carries a colonoscopy requirement because of neoplasia concern. Not a casual addition, and the reason it sits below rather than as the base.

VIP

Vasoactive intestinal peptide — named for the gut, and it regulates motility, secretion and mucosal immune tone all at once. The option that touches the nerve-immune side rather than the barrier itself.

The trade-off Very short half-life, usually intranasal, and it drops blood pressure. Its main clinical interest is chronic inflammatory response syndromes rather than ordinary gut complaints.

L-Glutamine

The primary fuel for enterocytes, which turn over every few days. Cheap, well tolerated, and it is the substrate the repair peptides above are asking the tissue to use.

The trade-off Slow and unglamorous. It supports repair rather than signalling it — which is why it complements the peptides rather than competing with them.

Zinc Carnosine

A chelate that adheres to the mucosal surface rather than absorbing immediately — used in Japan for gastric ulcer, a more specific track record than most gut supplements have.

The trade-off Zinc over a long course competes with copper. Not one to run indefinitely without checking.

The most common way a gut protocol backfires is doing it in the wrong order. Adding fibre and probiotics to a gut with overgrowth feeds the overgrowth. The bloating gets worse, the person concludes fibre is their enemy, and they spend years avoiding the thing that would have helped once the sequence was right. Barrier and digestion first. Microbiome second. Fibre last. If adding a prebiotic makes you noticeably worse within a few days, that is not an intolerance — it is information pointing at arm five. One more: antimicrobials are not selective. Berberine and oregano do not distinguish the bacteria you want from the ones you do not. Short courses, and always follow with the microbiome arm rather than leaving the space empty.
Section 2

Health supplements & substrate

The floor underneath the compounds. Cheap, well tolerated, and the part that decides whether anything above it has a fair chance — a secretagogue on a magnesium deficiency is a rounding error.

Digestive output — acid, enzymes & bile
Betaine HCl
5 options
The digestive-output arm
How oftenWith protein-containing meals only
5 options — 0 to swap in, 5 to stack ontap to collapse
Digestive EnzymesBio-GestStack on
A blend of digestive enzymes plus betaine HCl and bile support to help break down protein, fat and carbohydrate — useful when digestion is sluggish.
How oftenWith every meal you need them for - not on a schedule
Ox BileBile salts (bovine)Stack on
Supplemental bile salts for people who cannot make or release enough of their own — most relevantly after gallbladder removal.
How oftenWith fat-containing meals
Pancreatic EnzymesDipan-9Stack on
Full-strength pancreatic digestive enzymes (protease, lipase, amylase) for people who need robust help breaking down food — stronger than a plant-enzyme blend.
How oftenWith every meal containing fat or protein
TUDCATauroursodeoxycholic acidStack on
A bile acid that supports liver and bile flow, reduces ER (endoplasmic-reticulum) stress, and is popular for liver protection — especially alongside oral compounds that stress the liver.
How oftenDaily
GingerZingiber officinaleStack on
A root with strong evidence for nausea (motion sickness, pregnancy, chemo) plus digestion and anti-inflammatory support.
How oftenDaily, or as needed
Microbiome composition & prebiotic substrate
Saccharomyces boulardii
2 options
The microbiome arm
How oftenDaily, especially during antibiotics
2 options — 0 to swap in, 2 to stack ontap to collapse
Akkermansia muciniphilaPasteurised AkkermansiaStack on
A mucin-degrading gut bacterium that is depleted in obesity and metabolic disease.
How oftenDaily
InulinPrebiotic fibre (chicory root)Stack on
A fermentable prebiotic fibre that feeds bifidobacteria.
How oftenDaily, built slowly
Motility, IBS & the brain-gut axis
Peppermint Oil
5 options
The motility & IBS arm
How oftenPer meal, or per episode
5 options — 0 to swap in, 5 to stack ontap to collapse
Psyllium HuskSoluble fiberStack on
A soluble/gel-forming fiber that normalizes bowel regularity (both directions), lowers cholesterol and blunts glucose spikes.
How oftenDaily
MagnesiumBisglycinate (chelated)Stack on
An essential mineral and cofactor for 300+ enzymatic reactions.
How oftendaily
Partially Hydrolysed Guar Gum (PHGG)Soluble fibre powderStack on
A soluble, non-gelling, low-FODMAP fibre.
How oftenDaily, split
Low Dose NaltrexoneStack on
At 50mg naltrexone is a straightforward opioid antagonist.
How often1x · Nightly
Buy at AlgoRx →code CAMERON
TriphalaAmalaki + bibhitaki + haritakiStack on
A three-fruit Ayurvedic combination used as a gentle bowel regulator — traditionally positioned as a tonic rather than a laxative.
How oftenDaily
Overgrowth, dysbiosis & antimicrobials
Berberine
2 options
The overgrowth arm
How oftendaily
2 options — 0 to swap in, 2 to stack ontap to collapse
Oregano OilCarvacrolStack on
A potent antimicrobial essential oil (carvacrol/thymol) used short-term for gut-flora balance and immune defense.
How oftenShort courses only - 2-4 weeks, not continuous
AllicinStabilised allicin (garlic-derived)Stack on
The sulphur compound responsible for most of garlic's biological activity — and it is chemically unstable, which is the entire practical problem with this category.
How oftenDaily

The 12-week schedule

What goes in, what comes out, and when. The exact doses for each phase are inside the Academy — the structure below is free because it is the part you need to decide whether this fits your life.

1–45–89–1213+Ongoing
BPC-157 (inj/oral)
L-Glutamine
Betaine HCl
Saccharomyces boulardii
Peppermint Oil

Each bar is a week block that compound is running. The shape is free — it is what tells you whether this fits your life. The doses for each phase are the members half.

Weeks 1–4
Barrier and digestion

Repair the lining and get food actually broken down before changing anything about the microbiome.

No fibre, no probiotics yet. This is the phase people skip in their hurry to fix the microbiome, and skipping it is why the next phase so often goes badly.

Weeks 5–8
Microbiome and symptom control

Now add organisms, and address the specific symptom.

If bloating gets noticeably worse here, stop and go to arm five. Worsening on probiotics is a genuine signal for overgrowth rather than a reason to push through.

Weeks 9–12
Fibre, slowly

Only once the first two phases are settled.

Start at a quarter of the label dose and build over weeks. Fibre is the last thing in, and going too fast is what produces the experience people mistake for a permanent intolerance.

Weeks 13+
Keep the foundation

Most of this can stop; some should not.

Antimicrobials are never long-term. Glutamine and the fibre can continue. Betaine HCl is worth periodically testing whether you still need — if digestion has recovered, you may not.

Weeks Ongoing
Reintroduce, and stop treating

The goal is a wider diet, not a permanent protocol.

A restricted diet held indefinitely is a worse outcome than the symptom it fixed. Narrow diets starve the microbiome and the restriction itself becomes the problem. Reintroduce systematically once symptoms settle — that is the endpoint.

The doses for each phase are inside

Every compound above, dosed week by week, plus the reconstitution numbers and Coach Cam's notes on running it. $10/mo.

Unlock the schedule →

Bloodwork

Gut problems show up as nutrient problems, and that is what this panel is looking for. Malabsorption presents as low ferritin, low B12 and low vitamin D long before anything else declares itself. One test worth insisting on: coeliac serology, BEFORE removing gluten. The test measures your immune response to gluten — remove it first and the result is a false negative, and you will never know. People do this constantly and then face a six-week gluten challenge to get a real answer. hs-CRP tracks inflammatory load. Faecal calprotectin is not on this panel because it is a stool test, but it is the one that distinguishes inflammatory bowel disease from IBS — worth asking for if symptoms are severe.

Before you start

Everything, drawn before you start. This is the one that decides which pathway is actually yours - and the only one you cannot go back and collect later.

Complete Blood Count (CBC) with DifferentialFerritinVitamin B12Folate, SerumVitamin D (25-Hydroxy)hs-CRP (High-Sensitivity C-Reactive Protein)Comprehensive Metabolic Panel (CMP)Zinc, PlasmaThyroid Antibodies (TPO + TgAb)
Order the Baseline panel →9 markers · about $168 at list · code CAMERON auto-applies

Around week 8

The short list, drawn while you are running it. Not a progress report - it is the draw that catches the things that go wrong quietly.

Ferritinhs-CRP (High-Sensitivity C-Reactive Protein)
Order the Mid-cycle safety check panel →2 markers · about $28 at list · code CAMERON auto-applies

After

Drawn at the end, against your own baseline. This is what turns the protocol into information rather than a feeling.

Complete Blood Count (CBC) with DifferentialFerritinVitamin B12Vitamin D (25-Hydroxy)hs-CRP (High-Sensitivity C-Reactive Protein)
Order the Re-test panel →5 markers · about $76 at list · code CAMERON auto-applies

All three are drawn at Quest, 2,000+ US locations, no doctor visit, HSA/FSA eligible. Prefer to pick and choose? Every marker above links to its own page, and the panel builder assembles any combination.

Adjusting it

A protocol you cannot adjust is a protocol you abandon. Four situations come up on nearly every run of this — nausea that will not settle, a three-week stall, hair shedding, glucose moving the wrong way. Each one has a specific answer, and the wrong answer to a stall is the reason most people end up on six compounds that each do nothing.

The four decision rules are inside

What to change, what to leave alone, and how to tell a real stall from a water shift. $10/mo.

Unlock the decision rules →

The lines I'd stop at

This is a general protocol, and that is deliberate.

It is built for the common case, not for you specifically. Compound selection and dosing genuinely do change person to person — training age, bloodwork, what you have run before, what you react to. Adjust it against your own numbers using the panels above, or if you want it built around your labs rather than the average, that is what 1-on-1 coaching is for.

See every option for this goal → · Open the Vault